PCNA |
|
Available structures | PDB | Ortholog search: PDBe RCSB | List of PDB id codes | 4D2G, 1AXC, 1U76, 1U7B, 1UL1, 1VYJ, 1VYM, 1W60, 2ZVK, 2ZVL, 2ZVM, 3P87, 3TBL, 3VKX, 3WGW, 4RJF, 3JA9, 4ZTD, 5IY4, 5E0U, 5E0T, 5E0V | | |
Identifiers |
Aliases | PCNA, ATLD2, proliferating cell nuclear antigen |
External IDs | OMIM: 176740 MGI: 97503 HomoloGene: 1945 GeneCards: PCNA |
Factor location (Homo) | | Chr. | Chromosome 20 (human)[i] | | Band | 20p12.iii | Starting time | 5,114,953 bp[1] | End | v,126,626 bp[1] | |
Factor location (Mouse) | | Chr. | Chromosome 2 (mouse)[two] | | Ring | 2 F2|ii 64.15 cM | Start | 132,091,082 bp[ii] | Terminate | 132,095,234 bp[2] | |
RNA expression blueprint | Bgee | Top expressed in | - material anatomical entity
- bone marrow
- liver
- cancellous bone
- thymus
- embryo
- kidney
| More than reference expression information | | BioGPS | | More than reference expression information | | |
Gene ontology | Molecular function | MutLalpha complex binding identical poly peptide bounden enzyme binding receptor tyrosine kinase bounden Deoxyribonucleic acid binding Deoxyribonucleic acid polymerase binding damaged Dna bounden dinucleotide insertion or deletion bounden Get:0001948 poly peptide binding chromatin binding histone acetyltransferase bounden estrogen receptor binding purine-specific mismatch base pair DNA N-glycosylase activity DNA polymerase processivity factor action | Cellular component | - nucleus
- replisome
- nucleoplasm
- extracellular exosome
- DNA replication factor C circuitous
- centrosome
- PCNA complex
- nuclear replication fork
- PCNA-p21 circuitous
- replication fork
- nuclear body
- chromatin
| Biological process | - replication fork processing
- translesion synthesis
- Deoxyribonucleic acid replication
- nucleotide-excision repair, DNA gap filling
- poly peptide sumoylation
- regulation of DNA replication
- transcription-coupled nucleotide-excision repair
- positive regulation of deoxyribonuclease action
- nucleotide-excision repair, Deoxyribonucleic acid incision
- error-complimentary translesion synthesis
- positive regulation of DNA repair
- regulation of transcription involved in G1/S transition of mitotic cell wheel
- positive regulation of DNA replication
- response to lipid
- heart development
- DNA mismatch repair
- cellular response to Dna impairment stimulus
- mitotic telomere maintenance via semi-bourgeois replication
- epithelial cell differentiation
- response to cadmium ion
- cell population proliferation
- telomere maintenance
- fault-prone translesion synthesis
- cellular response to UV
- estrous cycle
- cellular response to hydrogen peroxide
- response to dexamethasone
- nucleotide-excision repair, Deoxyribonucleic acid incision, 5'-to lesion
- liver regeneration
- response to estradiol
- response to oxidative stress
- DNA repair
- response to L-glutamate
- Deoxyribonucleic acid damage response, point transduction by p53 class mediator resulting in cell cycle arrest
- DNA ligation
- leading strand elongation
- protein ubiquitination
- telomere maintenance via semi-conservative replication
- Become:0022415 viral process
| Sources:Amigo / QuickGO | |
Orthologs |
Species | Human | Mouse |
Entrez | | |
Ensembl | | |
UniProt | | |
RefSeq (mRNA) | | |
RefSeq (protein) | | |
Location (UCSC) | Chr 20: five.11 – 5.13 Mb | Chr 2: 132.09 – 132.1 Mb |
PubMed search | [iii] | [4] |
Wikidata |
View/Edit Human being | View/Edit Mouse | |
Cryo-EM structure of the Dna-leap PolD–PCNA processive circuitous
Proliferating cell nuclear antigen (PCNA) is a DNA clamp that acts as a processivity cistron for Deoxyribonucleic acid polymerase δ in eukaryotic cells and is essential for replication. PCNA is a homotrimer and achieves its processivity by encircling the DNA, where it acts as a scaffold to recruit proteins involved in DNA replication, Deoxyribonucleic acid repair, chromatin remodeling and epigenetics.[5]
Many proteins interact with PCNA via the ii known PCNA-interacting motifs PCNA-interacting peptide (PIP) box[half-dozen] and AlkB homologue 2 PCNA interacting motif (APIM).[7] Proteins binding to PCNA via the PIP-box are mainly involved in DNA replication whereas proteins bounden to PCNA via APIM are mainly important in the context of genotoxic stress.[viii]
Function [edit]
The protein encoded by this cistron is establish in the nucleus and is a cofactor of Deoxyribonucleic acid polymerase delta. The encoded protein acts as a homotrimer and helps increase the processivity of leading strand synthesis during Deoxyribonucleic acid replication. In response to DNA damage, this protein is ubiquitinated and is involved in the RAD6-dependent Dna repair pathway. Two transcript variants encoding the same protein accept been found for this gene. Pseudogenes of this gene accept been described on chromosome 4 and on the X chromosome.[ix]
Expression in the nucleus during DNA synthesis [edit]
PCNA was originally identified every bit an antigen that is expressed in the nuclei of cells during the Dna synthesis stage of the jail cell cycle.[10] Part of the poly peptide was sequenced and that sequence was used to allow isolation of a cDNA clone.[xi] PCNA helps concur Dna polymerase delta (Pol δ) to Deoxyribonucleic acid. PCNA is clamped[12] to DNA through the activeness of replication factor C (RFC),[13] which is a heteropentameric fellow member of the AAA+ class of ATPases. Expression of PCNA is under the command of E2F transcription factor-containing complexes.[14] [15]
Part in Deoxyribonucleic acid repair [edit]
Since Dna polymerase epsilon is involved in resynthesis of excised damaged DNA strands during Deoxyribonucleic acid repair, PCNA is important for both DNA synthesis and DNA repair.[16] [17]
PCNA is besides involved in the Deoxyribonucleic acid harm tolerance pathway known as mail service-replication repair (PRR).[18] In PRR, at that place are two sub-pathways: (1) a translesion pathway, which is carried out past specialised DNA polymerases that are able to incorporate damaged Deoxyribonucleic acid bases into their agile sites (unlike the normal replicative polymerase, which stall), and hence bypass the impairment, and (2) a proposed "template switch" pathway that is idea to involve damage bypass past recruitment of the homologous recombination machinery. PCNA is pivotal to the activation of these pathways and the choice as to which pathway is utilised by the cell. PCNA becomes post-translationally modified past ubiquitin.[xix] Mono-ubiquitin of lysine number 164 on PCNA activates the translesion synthesis pathway. Extension of this mono-ubiquitin by a non-approved lysine-63-linked poly-ubiquitin concatenation on PCNA[19] is thought to activate the template switch pathway. Furthermore, sumoylation (by pocket-sized ubiquitin-like modifier, SUMO) of PCNA lysine-164 (and to a lesser extent, lysine-127) inhibits the template switch pathway.[19] This combative effect occurs because sumoylated PCNA recruits a Deoxyribonucleic acid helicase chosen Srs2,[xx] which has a part in disrupting Rad51 nucleoprotein filaments central for initiation of homologous recombination.
PCNA-bounden proteins [edit]
PCNA interacts with many proteins.[21]
- Apoptotic factors
- ATPases
- Base excision repair enzymes
- Cell-cycle regulators
- Chromatin remodeling factor
- Clamp loader
- Cohesin
- DNA ligase
- DNA methyltransferase
- Dna polymerases
- E2 SUMO-conjugating enzyme
- E3 ubiquitin ligases
- Flap endonuclease
- Helicases
- Histone acetyltransferase
- Histone chaperone
- Histone deacetylase
- Mismatch repair enzymes
- NKp44 receptor
- Nucleotide excision repair enzyme
- Poly ADP ribose polymerase
- Procaspases[22]
- Protein kinases
- Licensing factor
- TCP poly peptide domain
- Topoisomerase
Interactions [edit]
PCNA has been shown to interact with:
- Annexin A2,[23]
- CAF-1,[24] [25] [26]
- CDC25C,[27]
- CHTF18,[23]
- Cyclin D1,[28] [29]
- Cyclin O,[23] [30]
- Cyclin-dependent kinase four,[29] [31]
- Cyclin-dependent kinase inhibitor 1C,[32]
- DNMT1,[33] [34] [35]
- EP300,[36]
- Establishment of Sister Chromatid Cohesion 2,[37]
- Flap structure-specific endonuclease 1,[38] [39] [xl] [41] [42] [43] [44]
- GADD45A,[45] [46] [47] [48] [49]
- GADD45G,[50] [51]
- HDAC1,[52]
- HUS1,[53]
- ING1,[54]
- KCTD13,[55]
- KIAA0101,[44]
- Ku70,[23] [56]
- Ku80,[23] [56] [57]
- MCL1,[58]
- MSH3,[23] [59] [sixty]
- MSH6,[23] [59] [60]
- MUTYH,[61]
- P21,[32] [40] [44] [62] [63] [64] [65] [66]
- POLD2,[67]
- POLD3,[23] [68]
- POLDIP2,[69]
- POLH,[seventy]
- POLL,[71] [72] [73]
- RFC1,[23] [62] [74] [75] [76]
- RFC2,[23] [77] [78]
- RFC3,[23] [79]
- RFC4,[23] [77]
- RFC5,[23] [75] [77]
- Ubiquitin C[80] [81] [82]
- Werner syndrome ATP-dependent helicase,[83] [84]
- XRCC1,[85] and
- Y box bounden protein 1.[86]
Proteins interacting with PCNA via APIM include man AlkB homologue ii, TFIIS-50, TFII-I, Rad51B,[vii] XPA,[87] ZRANB3,[88] and FBH1.[89]
Uses [edit]
Antibodies against proliferating prison cell nuclear antigen (PCNA) or monoclonal antibiotic termed Ki-67 tin can be used for grading of different neoplasms, due east.grand. astrocytoma. They tin can be of diagnostic and prognostic value. Imaging of the nuclear distribution of PCNA (via antibody labeling) can be used to distinguish betwixt early on, mid and late S phase of the cell cycle.[90] Notwithstanding, an of import limitation of antibodies is that cells need to exist stock-still leading to potential artifacts.
On the other mitt, the study of the dynamics of replication and repair in living cells tin be done introducing translational fusions of PCNA. To eliminate the demand for transfection and featherbed the problem of difficult to transfect and/or short lived cells, jail cell permeable replication and/or repair markers can be used. These peptides offer the singled-out advantage that can exist used in situ in living tissue and even distinguish cells undergoing replication from cells undergoing repair.[91]
PCNA is a potential therapeutic target in cancer therapy.[92]
See also [edit]
- Ki-67 – cellular marker for proliferation
- Transcription
References [edit]
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Further reading [edit]
- Prosperi Due east (1998). "Multiple roles of the proliferating prison cell nuclear antigen: DNA replication, repair and cell cycle control". Progress in Cell Bicycle Research. Vol. 3. pp. 193–210. doi:10.1007/978-1-4615-5371-7_15. ISBN978-1-4613-7451-0. PMID 9552415.
- Miura M (1999). "Detection of chromatin-bound PCNA in mammalian cells and its utilise to study DNA excision repair". J. Radiat. Res. forty (1): 1–12. Bibcode:1999JRadR..40....1M. doi:10.1269/jrr.40.1. PMID 10408173.
- Chen K, Pan ZQ, Hurwitz J (1992). "Sequence and expression in Escherichia coli of the 40-kDa subunit of activator 1 (replication factor C) of HeLa cells". Proc. Natl. Acad. Sci. U.S.A. 89 (7): 2516–2520. Bibcode:1992PNAS...89.2516C. doi:10.1073/pnas.89.7.2516. PMC48692. PMID 1313560.
- Kemeny MM, Alava G, Oliver JM (1993). "Improving responses in hepatomas with circadian-patterned hepatic artery infusions of recombinant interleukin-2". J. Immunother. 12 (4): 219–223. doi:10.1097/00002371-199211000-00001. PMID 1477073.
- Morris GF, Mathews MB (1990). "Assay of the proliferating jail cell nuclear antigen promoter and its response to adenovirus early region 1". J. Biol. Chem. 265 (27): 16116–25. doi:ten.1016/S0021-9258(17)46196-5. PMID 1975809.
- Webb G, Parsons P, Chenevix-Trench G (1991). "Localization of the gene for human proliferating nuclear antigen/cyclin by in situ hybridization". Hum. Genet. 86 (i): 84–half-dozen. doi:x.1007/bf00205180. PMID 1979311. S2CID 27107553.
- Travali S, Ku DH, Rizzo MG, Ottavio L, Baserga R, Calabretta B (1989). "Structure of the human being gene for the proliferating cell nuclear antigen". J. Biol. Chem. 264 (13): 7466–72. doi:x.1016/S0021-9258(18)83257-4. PMID 2565339.
- Ku DH, Travali S, Calabretta B, Huebner Thousand, Baserga R (1989). "Human being factor for proliferating cell nuclear antigen has pseudogenes and localizes to chromosome 20". Somat. Cell Mol. Genet. 15 (iv): 297–307. doi:x.1007/BF01534969. PMID 2569765. S2CID 27217843.
- Prelich G, Kostura M, Marshak DR, Mathews MB, Stillman B (1987). "The prison cell-bicycle regulated proliferating cell nuclear antigen is required for SV40 Deoxyribonucleic acid replication in vitro". Nature. 326 (6112): 471–5. Bibcode:1987Natur.326..471P. doi:10.1038/326471a0. PMID 2882422. S2CID 4336365.
- Almendral JM, Huebsch D, Blundell PA, Macdonald-Bravo H, Bravo R (1987). "Cloning and sequence of the human nuclear poly peptide cyclin: homology with Deoxyribonucleic acid-binding proteins". Proc. Natl. Acad. Sci. U.S.A. 84 (vi): 1575–nine. Bibcode:1987PNAS...84.1575A. doi:10.1073/pnas.84.half dozen.1575. PMC304478. PMID 2882507.
- Chen IT, Smith ML, O'Connor PM, Fornace AJ (1995). "Direct interaction of Gadd45 with PCNA and testify for competitive interaction of Gadd45 and p21Waf1/Cip1 with PCNA". Oncogene. 11 (10): 1931–7. PMID 7478510.
- Li X, Li J, Harrington J, Lieber MR, Burgers PM (1995). "Lagging strand Deoxyribonucleic acid synthesis at the eukaryotic replication fork involves binding and stimulation of FEN-1 by proliferating jail cell nuclear antigen". J. Biol. Chem. 270 (38): 22109–12. doi:10.1074/jbc.270.38.22109. PMID 7673186.
- Fukuda K, Morioka H, Imajou S, Ikeda Due south, Ohtsuka E, Tsurimoto T (1995). "Structure-part relationship of the eukaryotic DNA replication cistron, proliferating cell nuclear antigen". J. Biol. Chem. 270 (38): 22527–34. doi:10.1074/jbc.270.38.22527. PMID 7673244.
- Warbrick E, Lane DP, Glover DM, Cox LS (1995). "A pocket-sized peptide inhibitor of DNA replication defines the site of interaction between the cyclin-dependent kinase inhibitor p21WAF1 and proliferating cell nuclear antigen". Curr. Biol. 5 (3): 275–282. doi:10.1016/S0960-9822(95)00058-3. PMID 7780738. S2CID 1559243.
- Hall PA, Kearsey JM, Coates PJ, Norman DG, Warbrick East, Cox LS (1995). "Characterisation of the interaction betwixt PCNA and Gadd45". Oncogene. 10 (12): 2427–33. PMID 7784094.
- Kato S, Sekine Southward, Oh SW, Kim NS, Umezawa Y, Abe N, Yokoyama-Kobayashi M, Aoki T (1995). "Structure of a man full-length cDNA banking company". Gene. 150 (ii): 243–50. doi:x.1016/0378-1119(94)90433-2. PMID 7821789.
- Matsuoka Due south, Yamaguchi Thou, Matsukage A (1994). "D-type cyclin-binding regions of proliferating cell nuclear antigen". J. Biol. Chem. 269 (15): 11030–6. doi:10.1016/S0021-9258(19)78087-nine. PMID 7908906.
- Szepesi A, Gelfand EW, Lucas JJ (1994). "Clan of proliferating jail cell nuclear antigen with cyclin-dependent kinases and cyclins in normal and transformed human T lymphocytes". Blood. 84 (10): 3413–21. doi:10.1182/blood.V84.ten.3413.3413. PMID 7949095.
- Smith ML, Chen Information technology, Zhan Q, Bae I, Chen CY, Gilmer TM, Kastan MB, O'Connor PM, Fornace AJ (1994). "Interaction of the p53-regulated poly peptide Gadd45 with proliferating cell nuclear antigen". Science (Submitted manuscript). 266 (5189): 1376–80. Bibcode:1994Sci...266.1376S. doi:10.1126/science.7973727. PMID 7973727.
- Pan ZQ, Chen Yard, Hurwitz J (1993). "The subunits of activator ane (replication factor C) carry out multiple functions essential for proliferating-cell nuclear antigen-dependent Dna synthesis". Proc. Natl. Acad. Sci. U.South.A. 90 (one): 6–ten. Bibcode:1993PNAS...90....6P. doi:10.1073/pnas.ninety.i.half dozen. PMC45588. PMID 8093561.
External links [edit]
- PCNA at the US National Library of Medicine Medical Field of study Headings (MeSH)
- "ANA: Cell bike related (Mitotic): PCNA type one and blazon two Antibody Patterns". Antibody Patterns.com. Retrieved 2008-04-15 .
- Dan Krotz. "Structure of a clench–loader complex". Avant-garde Light Source News. Lawrence Berkeley National Laboratory. Retrieved 2008-04-15 .
- "Picture show showing a model of clamp loading of PCNA onto DNA". Pubmed Central. [ permanent dead link ]
- Overview of all the structural information bachelor in the PDB for UniProt: P12004 (Proliferating prison cell nuclear antigen) at the PDBe-KB.
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